Genome-wide identification and expression patterns in response to signals from cadmium of StCADs gene family in potato (Solanum tuberosum L.)

Yang, XinYu; Lv, HePing; Zhang, Wu; Liang, HongJie; Gao, YanPing; Kang, YiChen; Wu, YanBin; Wang, FangFang; Xi, Chunyan

doi:10.1186/s40538-024-00543-7

Chemical and Biological Technologies in Agriculture

Table 1 Physicochemical properties and subcellular localization of proteins encoded by StCADs

From: Genome-wide identification and expression patterns in response to signals from cadmium of StCADs gene family in potato (Solanum tuberosum L.)

Gene name	Trans ID	Theoretical pI	Molecular weight/Dalton	Number of amino acids/aa	Total number of atoms	Instability index	Grand average of hydropathicity	Aliphatic index	Subcellular localization
StCAD1	PT0040518	6.27	38,953	357	5479	18.63	− 0.073	90.25	Cytoplasmic
StCAD2	PT0080827	7.87	22,957.8	213	3270	23.48	0.141	101.56	Cytoplasmic
StCAD3	PT0013704	6.13	39,120.2	357	5512	17.05	− 0.04	91.07	Cytoplasmic
StCAD4	PT0024951	6.65	26,432.2	243	3703	28.14	− 0.12	85.66	Cytoplasmic
StCAD5	PT0024954	8.48	29,932.4	269	4179	23.61	− 0.21	80.63	Extracellular; periplasmic; cytoplasmic
StCAD6	PT0040520	8.04	33,783.1	308	4731	26.01	− 0.131	79.61	Cytoplasmic
StCAD7	PT0041563	6.35	27,097.8	249	3766	29.89	− 0.079	81.29	Extracellular; cytoplasmic
StCAD8	PT0041573	6.79	34,678.2	322	4901	30.06	0.026	91.65	Cytoplasmic
StCAD9	PT0041565	6.16	28,228.6	258	3940	25.65	− 0.045	82.65	Cytoplasmic
StCAD10	PT0041566	6.26	39,209.4	360	5513	26.19	− 0.055	87.66	Periplasmic; cytoplasmic
StCAD11	PT0041576	6.37	38,819	362	5491	25.97	0.027	92.33	Cytoplasmic
StCAD12	PT0041577	6.27	38,753.7	361	5476	25.94	− 0.015	92.03	Cytoplasmic
StCAD13	PT0040521	5.46	23,122.5	209	3207	28.56	− 0.072	82.79	Extracellular; periplasmic; cytoplasmic
StCAD14	PT0047475	5.84	38,952.8	361	5483	34.76	0.007	93.42	Cytoplasmic
StCAD15	PT0012845	5.62	41,876.4	385	5888	24.92	0.193	95.65	Cytoplasmic
StCAD16	PT0012846	5.47	38,596.5	356	5427	24.59	0.156	94.93	Cytoplasmic
StCAD17	PT0059621	8.3	39,913.9	363	5600	25.12	− 0.124	84.78	Periplasmic; cytoplasmic
StCAD18	PT0033637	6.11	39,504.4	361	5552	25.06	− 0.136	89.61	Cytoplasmic
StCAD19	PT0054502	7.54	39,479.4	361	5542	30.58	− 0.076	86.61	Cytoplasmic
StCAD20	PT0066217	5.7	38,933	358	5462	25.23	− 0.052	90.22	Cytoplasmic
StCAD21	PT0057743	5.88	32,914	310	4679	38.39	0.051	95.92	Cytoplasmic
StCAD22	PT0057744	7.53	34,655.1	326	4938	42.75	0.058	97.78	Cytoplasmic
StCAD23	PT0055608	6.46	34,848.1	328	4934	30.2	0.088	95.05	Cytoplasmic
StCAD24	PT0059935	6.78	28,422.5	266	3947	49.98	0.014	75.85	Periplasmic; cytoplasmic
StCAD25	PT0059936	7.89	46,166	433	6480	41.6	0.041	86.27	Cytoplasmic
StCAD26	PT0039777	7.17	39,473.3	368	5607	33.18	0.001	101.31	Cytoplasmic
StCAD27	PT0079606	6.48	41,033	389	5866	24.14	0.009	94.69	Periplasmic
StCAD28	PT0022514	8.93	35,199	331	5058	25.98	0.034	102.48	Periplasmic; cytoplasmic
StCAD29	PT0044065	9.18	35,636.6	333	5118	23.45	0.005	99.52	Periplasmic; cytoplasmic
StCAD30	PT0044064	9.1	34,618.1	330	4955	30.32	0.011	92.49	Periplasmic
StCAD31	PT0062565	8.63	34,560.1	330	4957	30.64	0.055	100.46	Periplasmic; cytoplasmic
StCAD32	PT0065063	6.61	38,663.1	356	5473	24.21	0.143	99.92	Cytoplasmic
StCAD33	PT0081907	6.32	37,323.6	347	5473	24.21	0.143	99.92	Cytoplasmic
StCAD34	PT0038524	6.46	35,518.2	327	5015	28.45	0.113	99.2	Cytoplasmic
StCAD35	PT0038525	6.36	41,099.7	378	5805	29.34	0.045	97.67	Cytoplasmic
StCAD36	PT0038526	6.01	32,906.1	305	4644	29.08	0.086	101.25	Cytoplasmic
StCAD37	PT0038529	6.37	34,614.2	321	4917	22.6	0.152	103.81	Cytoplasmic
StCAD38	PT0047759	6.08	39,408.8	361	5547	36.97	0.093	95.22	Cytoplasmic
StCAD39	PT0047760	5.85	41,103.7	375	5803	34.01	0.016	96.6	Cytoplasmic
StCAD40	PT0063937	6.19	41,032	380	5743	29.09	− 0.098	81.5	Cytoplasmic
StCAD41	PT0079071	5.92	41,156.5	380	5783	29	0.047	88.21	Cytoplasmic
StCAD42	PT0019942	6.32	40,643.8	380	5708	24.89	0.06	87.39	Cytoplasmic
StCAD43	PT0031884	6.64	41,505.1	381	5852	25.95	92.05	0.009	Cytoplasmic
StCAD44	PT0075616	6.09	20,849	190	2923	38.02	− 0.01	83.05	Periplasmic; cytoplasmic
StCAD45	PT0075618	6.13	42,316.9	381	5956	26.4	0.066	88.64	Cytoplasmic
StCAD46	PT0025617	6.61	42,309	389	5971	28.16	0.062	90.88	Cytoplasmic
StCAD47	PT0079173	5.78	34,124	316	4754	31.67	− 0.122	78.35	Cytoplasmic
StCAD48	PT0079174	5.31	23,927.5	223	3331	38.51	0.05	81.26	Cytoplasmic
StCAD49	PT0079175	5.37	41,651.9	387	5841	30.8	0	86.67	Cytoplasmic
StCAD50	PT0065246	9.11	41,511	381	5901	40.35	− 0.075	95.89	Periplasmic; cytoplasmic

PT is the abbreviation of PGSC0003DMT40

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