Table 1 Singletons occurring in Bacillus amyloliquefaciens subsp. plantarum (15 genomes), but not in Bacillus amyloliquefaciens subsp. amyloliquefaciens

RBAM_001770

DinB family; cl17821 YizA

BSU10800

49

6.7

RBAM_002650

GH25 muramidase YbfG

BSU02200

83

1.1

RBAM_002660

Unknown protein

6.7

RBAM_003280

Alpha-amylase AmyE

BSU03040

87

2.2

RBAM_003370

Putative antimicrobial peptide Lci

4.3

RBAM_004550

8-oxo-dGTP diphosphatase

BSU04330

60

3.1

RBAM_004640

Unknown protein

6.7

RBAM_005260

Proline/betaine transporter, MFS superfamily

1.2

RBAM_005610

Cation exporter TrkA, CzcD

BSU26640

89

1.2

RBAM_005640

4-Hydroxy-tetrahydrodipicolinate synthase

NP_389559

25

2.6

RBAM_006120

Unknown protein

NP_389102

43

6.7

RBAM_008480

Phosphoenolpyruvate synthase, PPDK_N

NP_389764

30

2.2

RBAM_010040

DNA alkylation repair enzyme, COG4335 YhaZ

BSU09810

63

3.1

RBAM_012380

Uronate isomerase (glucuronate isomerase) UxaC

BSU12300

77

2.2

RBAM_012390

Symporter, sugar (glycoside-pentoside-hexuronide) transporter

BSU12310

80

2.2

RBAM_013540

Oxidoreductase, NADB_Rossmann

BSU13770

97

6.6

RBAM_014340

Macrolactin synthesis; polyketide synthase of type I

4.3

RBAM_014350

Macrolactin synthesis; polyketide synthase of type I

4.3

RBAM_014360

Macrolactin synthesis; polyketide synthase of type I

4.3

RBAM_014370

Macrolactin synthesis; polyketide synthase of type I

4.3

RBAM_014390

Macrolactin synthesis; polyketide synthase of type I

4.3

RBAM_014400

Macrolactin synthesis; polyketide synthase of type I

4.3

RBAM_014410

Macrolactin synthesis; putative penicillin binding protein

4.3

RBAM_017950

2-keto-3-deoxygluconokinase KdgK

BSU22110

30

2.2

RBAM_017960

Zinc-type alcohol dehydrogenase, Zn_ADH7 YjmD

BSU12330

77

2.2

RBAM_017970

2-keto-3-deoxygluconate-6-phosphate aldolase KdgA

BSU22100

41

6.2

RBAM_017990

d-mannonate oxidoreductase, NADB_Rossmann

BSU12350

74

2.2

RBAM_018000

Negative transcriptional regulator (LacI family) KdgR

BSU22120

34

3.4

RBAM_018100

Endo-1,4-beta-glucanase, glycoside hydrolase family 5

BSU18130

93

2.2

RBAM_018230

H+/gluconate symporter and related permeases

BSU40050

81

3.4

RBAM_019040

Hypothetical protein, DUF4025

YP_054581

50

6.7

RBAM_019290

Hypothetical protein YoaQ

BSU18700

68

4.2

RBAM_020240

Isochorismatase, cystein hydrolase

BSU26760

93

6.7

RBAM_021810

Involved in biosynthesis of extracellular polysaccharides

BSU23680

65

2.2

RBAM_021880

Metalloprotein with Zn binding site YqjT

BSU23750

76

6.7

RBAM_021970

Difficidin synthesis; modular polyketide synthase of type I

4.3

RBAM_021980

Difficidin synthesis; modular polyketide synthase of type I

4.3

RBAM_021990

Difficidin synthesis; modular polyketide synthase of type I

4.3

RBAM_022000

Difficidin synthesis; modular polyketide synthase of type I

4.3

RBAM_022010

Difficidin synthesis; modular polyketide synthase of type I

4.3

RBAM_022030

Difficidin synthesis; modular polyketide synthase of type I

4.3

RBAM_022050

Difficidin synthesis; acyl-CoA synthetase

4.3

RBAM_022060

Probable acyl carrier protein

4.3

RBAM_022070

Difficidin synthesis

4.3

RBAM_022090

Putative transcription terminator/antiterminator, NGN KOW

BSU01010

26

3.2

RBAM_026190

Hypothetical protein YjdF

6.7

RBAM_028450

Isochorismatase hydrolase, cysteine hydrolase

RBAM_030020

Putative transcriptional regulator (LysR family), HTH_PBP2_LTTR YybE

BSU40670

31

3.4

RBAM_030030

Putative acetoacetate decarboxylase

RBAM_030040

Uncharacterized oxidoreductase, ApbA ApbA_C

ykpB

23

6.6

RBAM_033310

Putative endonuclease V, DNA repair enzyme

ywqL

85

RBAM_034390

ABC transporter permease, COG1284 (2xDUF161)

NP_388993

30

RBAM_037270

Cupin (JmjC) domain protein, cupin 8

RBAM_037280

ABC transporters with duplicated ATPase UuP

NP_388476

33

RBAM_037810

Hypothetical protein 2xDUF1529

6.7