Soil microbiota manipulation and its role in suppressing soil-borne plant pathogens in organic farming systems under the light of microbiome-assisted strategies

De Corato, Ugo

doi:10.1186/s40538-020-00183-7

Chemical and Biological Technologies in Agriculture

Table 1 Combining organic amendments with biocontrol agents for controlling soil-borne plant pathogens

From: Soil microbiota manipulation and its role in suppressing soil-borne plant pathogens in organic farming systems under the light of microbiome-assisted strategies

Organic amendment	Biocontrol agent	Target pathogen (fungi and oomycetes)	Disease/host plant	References
Fungi
Wheat bran, peat moss	Trichoderma harzianum	Sclerotium cepivorum	White rot/Allium	Avila Miranda et al. [9]
Vermicompost, neem cake	T. harzianum	Fusarium solani f. sp. melongeneae	Fusarium wilt/Eggplant	Bhadauria et al. [20]
Vineyard pruning waste	T. harzianum	Fusarium oxysporum f. sp. melonis	Fusarium wilt/Melon	Blaya et al. [23]
Cow dung	T. harzianum	F. oxysporum Sclerotium rolfsii	Foot rot/Lentil	Hannan et al. [86]
Green compost from pig manure, rice straw, alcohol, vinegar	Trichoderma harzianum SQR T037	Fusarium oxysporum f. sp. cucumerinum	Fusarium wilt/Cucumber	Yang et al. [233]
Fresh chicken manure	Trichoderma asperellum Trichoderma atroviridae	Macrophomina phaseolina	Charcoal rot/Strawberry	Domínguez et al. [67]
Farm yard manure and poultry manure	Trichoderma viridae	Pythium sp., Rhizoctonia solani, Phytophthora sp., Fusarium sp.	Damping off/Tomato	Joshi et al. [111]
Green compost from cork, grape, olive marc, and spent mushroom	T. asperellum	R. solani	Damping-off/Cucumber	Trillas et al. [210]
Composted sawdust, potato waste, and rice straw	T. harzianum Penicillium oxalicum Chaetomium globosum	F. oxysporum	Fusarium wilt/Legumes	Haggag and Saber [85]
Bacteria
Compost from pig manure, canola cake	Bacillus subtilis SQR 9	F. oxysporum f. sp. cucumerinum	Fusarium wilt/Cucumber	Cao et al. [35]
Amino acid fertilizer from rapeseed meal fermentation, and compost from pig manure	B. subtilis	Verticillium dahliae	Verticillium wilt/Cotton	Lang et al. [123]
Amino acid fertilizer from rapeseed meal	Bacillus pumilus SQR-N43	R. solani	Damping-off/Cucumber	Huang et al. [98]
Compost from pig manure, canola cake	Bacillus amyloliquefaciens W19	Fusarium oxysporum f. sp. cubense	Fusarium wilt/Banana	Wang et al. [221]
Pig manure, rice straw	B. amyloliquefaciens	Ralstonia solanacearum	Bacterial wilt/Tomato	Wei et al. [223]
Farm yard manure, compost, poultry manure, press mud, vermicompost, and neem cake	Pseudomonas fluorescens	Pythium aphanidermatum	Damping off/Tomato	Jayaraj et al. [107]
Fungi + Bacteria
Neem cake, farm yard manure, and micronutrient	T. viridae P. fluorescens B. subtilis	Lasiodiplodia theobromae	Physic nut collar and root rot	Latha et al. [125]
Mustard oil cake	P. fluorescens Glomus sinuosum Gigaspora albida	R. solani	Root rot/Bean	Neeraj [167]
Olive mill waste	B. amyloliquefaciens Burkholderia cepacia	V. dahliae	Verticillium wilt/Olive	Vitullo et al. [215]
Compost from pig manure, canola cake	T. harzianum Paenibacillus polymyxa	Fusarium oxysporum f. sp. niveum	Fusarium wilt/Watermelon	Wu et al. [227]
Commercial organic fertilizer made of compost from pig manure, canola cake	P. polymyxa B. subtilis Penicillium spp. Aspergillus spp.	F. oxysporum f. sp. melonis	Fusarium wilt/Melon	Zhao et al. [239]

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